Results from a genetic query I ran on Gardasil's 530 letter HPV16-L1 Protein, March 15, 2013

 

Descriptions

Sequences producing significant alignments:

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Sequences producing significant alignments:

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Description

Max score

Total score

Query cover

E value

Max ident

Accession

[ ]

RecName: Full=ADP-ribosylation factor-like protein 2-binding protein-like protein; Short=ARF-like 2-binding protein-like protein; Short=ARL2BP-like protein

30.0

30.0

6%

2.0

44%

A8MYR8.1

[ ]

 

RecName: Full=Killer cell lectin-like receptor subfamily G member 1; AltName: Full=C-type lectin domain family 15 member A; AltName: Full=ITIM-containing receptor MAFA-L; AltName: Full=MAFA-like receptor; AltName: Full=Mast cell function-associated antigen

29.3

29.3

14%

3.9

28%

Q96E93.1

[ ]

 

RecName: Full=Heat shock protein 75 kDa, MITOCHONDRIAL; Short=HSP 75; AltName: Full=TNFR-associated protein 1; AltName: Full=Tumor necrosis factor type 1 receptor-associated protein; Short=TRAP-1; Flags: Precursor

30.0

30.0

8%

4.2

31%

Q12931.3

[ ]

 

RecName: Full=Keratin, type II cuticular Hb1; AltName: Full=Hair keratin K2.9; AltName: Full=Keratin, hair, basic, 1; AltName: Full=Keratin-81; Short=K81; AltName: Full=Metastatic lymph node 137 gene protein; Short=MLN 137; AltName: Full=Type II hair keratin Hb1; AltName: Full=Type-II keratin Kb21; AltName: Full=ghHKb1; Short=ghHb1

29.6

29.6

7%

5.4

44%

Q14533.3

[ ]

 

RecName: Full=Thrombospondin type-1 domain-containing protein 7A; Flags: Precursor

29.6

29.6

17%

5.5

28%

Q9UPZ6.4

[ ]

 

RecName: Full=Breast cancer type 2 susceptibility protein; AltName: Full=Fanconi anemia group D1 protein  

29.3

29.3

9%

7.8

25%

P51587.2

[ ]

 

RecName: Full=WD repeat-containing protein mio

29.3

29.3

9%

7.9

34%

Q9NXC5.2

Alignments

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RecName: Full=ADP-ribosylation factor-like protein 2-binding protein-like protein; Short=ARF-like 2-binding protein-like protein; Short=ARL2BP-like protein

sp|A8MYR8.1|AR2BL_HUMAN 161 1

 

Gene-associated gene details

Map Viewer-aligned genomic context

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Alignment statistics for match #1

Score

Expect

Method

Identities

Positives

Gaps

30.0 bits(66)

2.0

Composition-based stats.

14/32(44%)

19/32(59%)

0/32(0%)

Query  230  GFGAMDFTTLQANKSEVPLDICTSICKYPDYI  261
            GF    FTTLQ +K EV  DI   + K+ D++
Sbjct  86   GFTMATFTTLQHHKDEVVGDILQMLLKFTDFL  117
 
 

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RecName: Full=Killer cell lectin-like receptor subfamily G member 1; AltName: Full=C-type lectin domain family 15 member A; AltName: Full=ITIM-containing receptor MAFA-L; AltName: Full=MAFA-like receptor; AltName: Full=Mast cell function-associated antigen

sp|Q96E93.1|KLRG1_HUMAN 195 1

 

Gene-associated gene details

Map Viewer-aligned genomic context

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Alignment statistics for match #1

Score

Expect

Method

Identities

Positives

Gaps

29.3 bits(64)

3.9

Compositional matrix adjust.

22/78(28%)

31/78(39%)

16/78(20%)

Query  182  LCLIGCKPPIGEHWGKGSPCNNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQA  241
             C IG +   G  W  GSP N   ++          N+ +Q         GA++   LQA
Sbjct  130  FCWIGLRNNSGWRWEDGSPLNFSRISS---------NSFVQTC-------GAINKNGLQA  173
 
Query  242  NKSEVPLDICTSICKYPD  259
            +  EVPL      C + D
Sbjct  174  SSCEVPLHWVCKKCPFAD  191
 
 

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RecName: Full=Heat shock protein 75 kDa, mitochondrial; Short=HSP 75; AltName: Full=TNFR-associated protein 1; AltName: Full=Tumor necrosis factor type 1 receptor-associated protein; Short=TRAP-1; Flags: Precursor

sp|Q12931.3|TRAP1_HUMAN 704 1

 

Gene-associated gene details

Map Viewer-aligned genomic context

GenPeptGraphics Next Match Previous Match

Alignment statistics for match #1

Score

Expect

Method

Identities

Positives

Gaps

30.0 bits(66)

4.2

Compositional matrix adjust.

16/51(31%)

25/51(49%)

5/51(9%)

Query  42   VPVSKVVSTDEYVART-----NIYYHAGTSRLLAVGHPYFPIKKPNNNKIL  87
            +P  ++ S  EY +R      NIYY    +R LA   PY+   K  + ++L
Sbjct  475  LPSGQLTSLSEYASRMRAGTRNIYYLCAPNRHLAEHSPYYEAMKKKDTEVL  525
 
 

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RecName: Full=Keratin, type II cuticular Hb1; AltName: Full=Hair keratin K2.9; AltName: Full=Keratin, hair, basic, 1; AltName: Full=Keratin-81; Short=K81; AltName: Full=Metastatic lymph node 137 gene protein; Short=MLN 137; AltName: Full=Type II hair keratin Hb1; AltName: Full=Type-II keratin Kb21; AltName: Full=ghHKb1; Short=ghHb1

sp|Q14533.3|KRT81_HUMAN 505 1

 

Gene-associated gene details

Map Viewer-aligned genomic context

GenPeptGraphics Next Match Previous Match

Alignment statistics for match #1

Score

Expect

Method

Identities

Positives

Gaps

29.6 bits(65)

5.4

Compositional matrix adjust.

17/39(44%)

22/39(56%)

3/39(7%)

Query  182  LCLIGCKPPIGEHWGKGSPCN-NVAVNPGDCPPLELINT  219
            LC+ G +P  G      +PCN NVAV+ G C P   +NT
Sbjct  440  LCVSGSRPVTGSVCS--APCNGNVAVSTGLCAPCGQLNT  476
 
 

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RecName: Full=Thrombospondin type-1 domain-containing protein 7A; Flags: Precursor

sp|Q9UPZ6.4|THS7A_HUMAN 1657 1

 

Gene-associated gene details

Map Viewer-aligned genomic context

GenPeptGraphics Next Match Previous Match

Alignment statistics for match #1

Score

Expect

Method

Identities

Positives

Gaps

29.6 bits(65)

5.5

Composition-based stats.

28/101(28%)

43/101(42%)

9/101(8%)

Query  168   DNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCNNVAVNPGDCPPLELINTVIQDGD--  225
             D R C S+   Q++ C +  KP     +G+ SPC       G+      I+ V+ DG   
Sbjct  1321  DGRPCPSL-MDQSKPCPV--KPCYRWQYGQWSPCQVQEAQCGEGTRTRNISCVVSDGSAD  1377
 
Query  226   ----MVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIK  262
                 +VD  F A     +  NK+ V  + C+  C    Y+K
Sbjct  1378  DFSKVVDEEFCADIELIIDGNKNMVLEESCSQPCPGDCYLK  1418